Package index

All functions

FeaturePlotPI()

Visualize isoform percent inclusion (PI), ratios and distributions on embeddings

IsoformBoxPlot()

Boxplot of isoform expression across conditions

IsoformPseudotimePlot()

Plot isoform PI or expression along pseudotime with annotation bands

computePHI()

Compute Phi (ϕ) from a PI matrix

computePIMatrix()

Compute PI (Percent Isoform) Matrix from Isoform Counts

plotPIPHI()

Plot mean PI vs Phi for isoforms